rs78154367 chr16:25258175 C>T
- Sequence
tgccggggaaggagagcacgggag[C/T]ggggactcctgtgtctggcggagg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- GABP1_HUMAN ZN133_HUMAN TBX21_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 1.27 | n/a | 2.00 | n/a | n/a | |||
| ZN133_HUMAN | 3.07 | n/a | 2.00 | n/a | No Hit | |||
| TBX21_HUMAN | 1.46 | -0.03 | 1.00 | n/a | No Hit | |||
| CDK9_HUMAN | 1.16 | 0.16 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.30 | 1.44 | 1.27 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Stomach, Thyroid