rs7817515 chr8:58535019 T>G
- Sequence
gcctgcgctgtggctccacctcgt[T/G]gctgctaggagtacagtgagaaac
- ASB in cell types
- spleen Kelly (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | n/a | 4.22 | 1.00 | 4.93 | Concordant | |||
| CTCFL_HUMAN | -3.24 | 3.10 | 1.00 | 4.53 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood