rs7817629 chr8:41542794 G>A

Sequence
ttcctcagcagtgctgtgggtcac[G/A]ggcgtgaagcggagctcgaggcag
ASB in cell types
GM18486 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) T47D (invasive ductal carcinoma) MCF10AT1 (breast premetastatic epithelial cells)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 1.54 0.76 0.011.00 1.05 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Whole_Blood

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