rs7824473 chr8:139736610 T>C

Sequence
aagcttcctgaattcaaaaggatg[T/C]cctggtctcccctgggacccccag
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia) SUP-B15 (Childhood B acute lymphoblastic leukemia)
ASB for transcription factors
ERG_HUMAN GCR_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ERG_HUMAN n/a 2.08 1.001.5·10-10 1.50 n/a No Hit
GCR_HUMAN n/a 1.59 1.000.01 3.00 n/a No Hit
ELF1_HUMAN -2.16 2.54 1.000.03 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  ldl cholesterol change with statins,  mitral annular calcium,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis

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