rs7827063 chr8:10800305 C>T

Sequence
gagtcaacctgttgctaaacgaca[C/T]tgatgcaatcagatgttaccgcag
ASB in cell types
K562 (myelogenous leukemia) SUM159PT (Triple negative breast cancer) MSC (mesenchymal stem cells)
ASB for transcription factors
CEBPB_HUMAN RFX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 2.58 n/a 2.7·10-41.00 1.25 -0.35 Weak Concordant
RFX1_HUMAN 2.57 -1.15 1.0·10-31.00 2.00 n/a No Hit
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Motif analysis

CEBPB_HUMAN Weak Concordant
CEBPB_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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