rs7828903 chr8:8425671 A>T

Sequence
agatttacttaaaatcttaacatt[A/T]atgtaatataacagggcgctcaat
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN -4.15 2.35 1.000.02 1.50 3.13 Concordant
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Motif analysis

FOXA2_HUMAN Concordant
FOXA2_HUMAN pic

Genetic associations

GRASP college completion,  systolic blood pressure (sbp),  years of education
GTEx eQTL Adipose_Visceral_Omentum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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