rs7834596 chr8:119417042 G>T

Sequence
aagctgcttcctcccttctctttt[G/T]tattccccttcccagagggcgata
ASB in cell types
testis RCC 7860 (Renal cell carcinoma) foreskin keratinocyte BJ (fibroblasts)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
testis n/a 2.84 1.005.4·10-3 1.00
RCC 7860 (Renal cell carcinoma) -5.13 3.05 1.005.6·10-3 2.00
foreskin keratinocyte 0.92 -2.47 8.0·10-31.00 2.00
BJ (fibroblasts) 2.27 -2.27 0.041.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  height,  ldl cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis

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