rs784080 chr12:103957279 A>C

Sequence
tgccggcgcaggcacgtgacgcag[A/C]ggaggtggggcgctgggagaaagc
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) foreskin keratinocyte
ASB for transcription factors
ANDR_HUMAN EGR1_HUMAN COT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -0.14 3.32 1.007.1·10-6 1.88 n/a No Hit
EGR1_HUMAN -3.35 2.99 1.003.0·10-4 2.00 2.39 Concordant
COT1_HUMAN n/a 1.84 1.009.4·10-3 2.00 n/a No Hit
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Motif analysis

EGR1_HUMAN Concordant
EGR1_HUMAN pic

Genetic associations

GRASP birth weight,  neuroblastoma (brain cancer),  stabilized warfarin dose,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Artery_Aorta,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Testis

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