rs78456314 chr11:62841395 A>G
- Sequence
gcgctcaatagttccaactacccc[A/G]gaggctgaagtatgaagattgctg
- ASB in cell types
- MV-4-11 (Childhood acute monocytic leukemia) HCT-116 (colon carcinoma) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- BRD4_HUMAN ELL2_HUMAN CDK8_HUMAN PEX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.36 | -1.02 | 2.00 | n/a | n/a | |||
| ELL2_HUMAN | 1.57 | -4.19 | 2.50 | n/a | n/a | |||
| CDK8_HUMAN | 2.46 | -2.18 | 1.00 | n/a | n/a | |||
| PEX2_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a | |||
| AFF4_HUMAN | 1.56 | -4.57 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood