rs78767971 chr20:54107699 A>C
- Sequence
ggcccaagttgagttaattattta[A/C]taaggcttccacttagtctgtgta
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- SKI_HUMAN HNF1A_HUMAN KDM6A_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SKI_HUMAN | -2.55 | 2.55 | 1.00 | n/a | n/a | |||
| HNF1A_HUMAN | n/a | 3.09 | 1.50 | 3.66 | Concordant | |||
| KDM6A_HUMAN | -2.83 | 3.08 | 1.00 | n/a | n/a | |||
| FOXP1_HUMAN | -2.31 | 2.32 | 1.25 | 4.29 | Concordant | |||
| FOXK2_HUMAN | 0.34 | 2.57 | 1.25 | 3.17 | Concordant |
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Motif analysis
