rs788016 chr2:197487569 G>A

Sequence
accctgttctgcgtatcttggaaa[G/A]tattcttactgccaggcaggaaca
ASB in cell types
LNCaP (prostate carcinoma)
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
LNCaP (prostate carcinoma) 1.88 -1.27 2.8·10-31.00 1.83
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Motif analysis

No data available

Genetic associations

GRASP asthma,  irritible bowel syndrome,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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