rs78864427 chr19:17126180 C>T
- Sequence
ctaaacttctcatttcctcgcctc[C/T]agccctgcctgctggcctccgccc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -2.01 | 2.38 | 1.00 | 0.05 | Weak Concordant | |||
| STAG1_HUMAN | -1.63 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
