rs78931528 chr17:75516041 G>A
- Sequence
cccggccctcgaaacctggcttcg[G/A]agcccagccgtagggaccggacgg
- ASB in cell types
- breast tumor CD34+ hematopoietic stem cells 22RV1 (prostate carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN TIF1B_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.08 | 1.47 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.28 | 0.36 | 2.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 2.60 | n/a | 2.00 | n/a | n/a | |||
| GCR_HUMAN | 1.03 | 0.18 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood