rs78962647 chr15:100350369 G>C
- Sequence
gggccttcaaatgtccccatcctt[G/C]aaaaggcaactccagtggcatctt
- ASB in cell types
- CD14+ monocytes MS-1 (Small cell lung carcinoma) glioblastoma cells THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.67 | n/a | 2.00 | -2.77 | Concordant | |||
| CTCF_HUMAN | 0.84 | 0.60 | 1.27 | n/a | No Hit |
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Motif analysis
