rs78983851 chr5:56245844 T>G
- Sequence
cgtacaattcctaccttttaatat[T/G]aattcacttatttactcaacaaac
- ASB in cell types
- LNCaP (prostate carcinoma) LN95(Prostate adenocarcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.07 | 1.15 | 1.45 | n/a | No Hit | |||
| ANDR_HUMAN | 0.00 | 1.04 | 1.46 | 1.80 | Weak Concordant | |||
| HXB13_HUMAN | -0.19 | 1.61 | 1.40 | n/a | No Hit |
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Motif analysis
