rs790103 chr3:122651935 A>C
- Sequence
tccaacagacctgcagctgaggga[A/C]ctgactgttagacggaaaattaac
- ASB in cell types
- LNCaP (prostate carcinoma) HepG2 (hepatoblastoma) pancreas
- ASB for transcription factors
- ANDR_HUMAN RERE_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.66 | -0.07 | 2.08 | -3.51 | Concordant | |||
| RERE_HUMAN | 2.47 | n/a | 1.00 | n/a | n/a | |||
| CEBPA_HUMAN | 2.37 | -4.37 | 1.50 | n/a | No Hit |
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Motif analysis
