rs79034755 chr17:82232019 C>T
- Sequence
tccttgtttgcacaacaggggctg[C/T]gggggaagaagggaactgagggag
- ASB in cell types
- breast tumor MDM(monocyte derived macrophages) 22RV1 (prostate carcinoma) monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- ANDR_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.52 | -0.07 | 1.59 | n/a | No Hit | |||
| SPI1_HUMAN | 1.69 | 0.27 | 1.67 | 0.99 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood