rs79058301 chr19:18340520 C>T
- Sequence
cgggggcggggcgcagggcgcgca[C/T]gctgcgtctcgggcccgggggcgc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) 22RV1 (prostate carcinoma) UCLA1 hESCs SMMC-7721 (hepatocellular carcinoma)
- ASB for transcription factors
- GMEB1_HUMAN RELB_HUMAN AP2C_HUMAN EP300_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GMEB1_HUMAN | 1.65 | n/a | 2.00 | -4.81 | Concordant | |||
| RELB_HUMAN | -1.05 | 1.54 | 1.00 | n/a | No Hit | |||
| AP2C_HUMAN | 2.33 | -1.93 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 2.27 | -2.27 | 1.00 | n/a | n/a | |||
| VEZF1_HUMAN | 1.22 | -3.73 | 2.00 | -0.36 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Uterus, Vagina