rs79063875 chr19:39111860 C>T
- Sequence
cccaaggcacgcaggactccttgc[C/T]gttcctggaacacagccagctctt
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- EP300_HUMAN JUN_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | -0.85 | 2.45 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | -0.25 | 1.63 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -4.53 | 2.03 | 2.00 | 2.46 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Nerve_Tibial, Pancreas, Stomach, Thyroid