rs79084032 chr6:53723708 T>C
- Sequence
aagcaggagttagctaagaaaacc[T/C]gcagaggaatcacatttacaaaga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- ARI1A_HUMAN FOXA1_HUMAN GRHL2_HUMAN SNF5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1A_HUMAN | 1.94 | -1.02 | 1.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.21 | -0.26 | 1.49 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.38 | -0.22 | 1.50 | -2.13 | Concordant | |||
| SNF5_HUMAN | 1.84 | -1.51 | 1.00 | n/a | n/a | |||
| REQU_HUMAN | 2.33 | -2.17 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
