rs79132977 chr12:130762074 C>T
- Sequence
catcctgcaaggcaagttccgcac[C/T]gcgaccacaggcggccacagcccc
- ASB in cell types
- SEM (childhood B acute lymphoblastic leukemia) MS-1 (Small cell lung carcinoma) GM17942 (lymphoblastoid cell) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.94 | 1.26 | 1.53 | 0.46 | Weak Concordant | |||
| ERG_HUMAN | -4.50 | 3.16 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood