rs79151267 chr11:49526406 G>A
- Sequence
ttcttcagtagggggaagacctag[G/A]ccagcagcagctcttactctgcaa
- ASB in cell types
- THP-1 (acute monocytic leukemia) IMR-5 (Neuroblastoma) SYO-1(Biphasic synovial sarcoma) LUHMES (lund human mesencephalic cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.78 | -0.06 | 1.55 | n/a | No Hit | |||
| RAD21_HUMAN | 1.99 | -0.11 | 1.18 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Skin_Sun_Exposed_Lower_leg, Testis