rs79168029 chr7:27740072 G>C
- Sequence
ctgggggcgtgtcgtcgcggaggg[G/C]agcggcgaaccaggcaggaggcgg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) adult erythroblasts CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ANDR_HUMAN HCFC1_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.19 | -4.99 | 2.25 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.44 | n/a | 2.00 | n/a | n/a | |||
| RFOX2_HUMAN | -3.94 | 1.58 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid