rs79176848 chr3:125742901 A>G
- Sequence
ttcaactcttcaagtgcatggagc[A/G]tgatagaaaagggcctactgaact
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) MM1.S (plasma cell myeloma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.98 | -0.80 | 3.10 | n/a | No Hit | |||
| STAG1_HUMAN | 2.63 | n/a | 4.50 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Muscle_Skeletal, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid