rs79191970 chr12:130765012 G>T
- Sequence
ttaatgatgtggtattgatgatgt[G/T]ttgttgtggtgttgatgatgtcat
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN HES1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | 0.68 | -0.68 | 1.00 | -0.70 | Weak Concordant | |||
| ATF7_HUMAN | 0.58 | -0.58 | 1.00 | n/a | No Hit | |||
| HES1_HUMAN | 3.11 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
