rs79224858 chr7:156640803 G>A
- Sequence
tccctgggttccggtgttcgcgga[G/A]gagtcgaggcacggagaggcttcg
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ZBT40_HUMAN STAT1_HUMAN GABP1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT40_HUMAN | -1.41 | 1.83 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.36 | -0.86 | 2.00 | 3.57 | Discordant | |||
| GABP1_HUMAN | n/a | 1.61 | 3.00 | n/a | n/a | |||
| GABPA_HUMAN | -1.56 | 2.65 | 1.75 | 4.32 | Concordant | |||
| MNT_HUMAN | 0.19 | 1.45 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 12
Motif analysis
