rs79239313 chr14:95534553 G>A
- Sequence
cggatacccgcccggcctagcccc[G/A]ctacctcccaagagaccaacacga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- FOXK2_HUMAN TCF21_HUMAN HCFC1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 4.37 | 0.34 | 1.50 | n/a | No Hit | |||
| TCF21_HUMAN | 2.67 | -4.89 | 2.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.91 | -1.31 | 1.75 | n/a | n/a | |||
| BRD4_HUMAN | 0.38 | 1.42 | 1.18 | n/a | n/a | |||
| NELFE_HUMAN | -0.23 | 1.10 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid