rs79251590 chr1:36398096 T>C
- Sequence
caggctccttcccaggctccggca[T/C]ggagcagtgaccaagatcaagtgg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN NRF1_HUMAN HDAC2_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.03 | -5.54 | 2.00 | n/a | No Hit | |||
| NRF1_HUMAN | -0.53 | 1.03 | 1.00 | n/a | No Hit | |||
| HDAC2_HUMAN | -0.56 | 1.82 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 0.33 | 1.08 | 1.00 | n/a | n/a | |||
| NELFE_HUMAN | -0.93 | 1.49 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis