rs79281902 chr1:220090042 C>G

Sequence
gaaggaaagaacacattaagccag[C/G]aacagtgtgttgaaacaaaaaaaa
ASB in cell types
22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.17 n/a 2.2·10-31.00 2.00 6.69 Discordant
ESR1_HUMAN 2.46 -1.50 0.021.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Colon_Transverse,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Whole_Blood

Download