rs79350049 chr12:95217374 C>A
- Sequence
attccgtcccgccgccccgcggcg[C/A]agcctgagcgccacacaaaggacg
- ASB in cell types
- breast tumor GBM39 (Human brain tumor) adult erythroblasts 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN CTCF_HUMAN SMC3_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.74 | -4.97 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.39 | 1.01 | 1.17 | 1.31 | Weak Concordant | |||
| SMC3_HUMAN | 0.25 | 2.59 | 1.00 | n/a | n/a | |||
| RBBP5_HUMAN | 1.26 | n/a | 2.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.32 | -4.55 | 2.00 | n/a | No Hit |
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Motif analysis
