rs79377825 chr17:12021154 C>T
- Sequence
ccctccccggcttcccgccccgct[C/T]ccggccgcctccggcccggcttgg
- ASB in cell types
- SEM (childhood B acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ERG_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | n/a | 1.96 | 1.33 | 8.43 | Concordant | |||
| TYY1_HUMAN | 2.54 | n/a | 1.75 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Lung, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Thyroid