rs79385461 chr16:20440108 A>G
- Sequence
ctccccaaagcacattttgttcct[A/G]ctctaagaacagcctgatccctac
- ASB in cell types
- LNCaP (prostate carcinoma) liver breast tumor
- ASB for transcription factors
- ANDR_HUMAN SP1_HUMAN RXRA_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.44 | 0.31 | 1.69 | 1.07 | Weak Discordant | |||
| SP1_HUMAN | 2.72 | -3.73 | 1.50 | n/a | No Hit | |||
| RXRA_HUMAN | 2.49 | -3.90 | 1.50 | n/a | No Hit | |||
| HNF4A_HUMAN | 1.73 | -2.99 | 1.50 | n/a | No Hit | |||
| MTOR_HUMAN | 2.44 | n/a | 1.50 | n/a | n/a |
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Motif analysis
