rs79390005 chr12:103925520 G>A
- Sequence
aggggaggccagctgccatgctgt[G/A]agcacacttaagcagccctatgga
- ASB in cell types
- HEK293 (embryonic kidney) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- ZIC2_HUMAN GLIS1_HUMAN ZN600_HUMAN ZBT17_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | 2.57 | n/a | 2.00 | -4.51 | Concordant | |||
| GLIS1_HUMAN | 0.95 | -0.26 | 2.00 | n/a | No Hit | |||
| ZN600_HUMAN | 1.92 | n/a | 2.00 | n/a | n/a | |||
| ZBT17_HUMAN | 2.38 | n/a | 2.00 | n/a | No Hit | |||
| OSR2_HUMAN | 2.74 | -5.07 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid