rs79404186 chr5:181191682 G>A
- Sequence
ttaaggaaagaataggaaaagacg[G/A]aagcaggccccagcgagatttgaa
- ASB in cell types
- VCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) adipose
- ASB for transcription factors
- ERG_HUMAN MBL2_HUMAN SUMO2_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | 2.60 | -0.51 | 1.71 | -4.12 | Concordant | |||
| MBL2_HUMAN | 1.89 | -3.61 | 2.00 | n/a | n/a | |||
| SUMO2_HUMAN | 1.52 | -0.00 | 3.29 | n/a | n/a | |||
| FOXK2_HUMAN | 3.14 | 0.03 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.74 | -5.07 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa