rs79419878 chr2:174503524 C>A
- Sequence
acaagtgtaacatgaaagtggttt[C/A]ttttggctgttaccatctctcagg
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.82 | 0.32 | 2.13 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.33 | -4.65 | 2.94 | 3.40 | Discordant |
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Motif analysis
