rs79447376 chr3:23946511 A>G
- Sequence
ggatgccgtctgtttacaaaaaaa[A/G]ccgtttgctctaggacgcgacctg
- ASB in cell types
- HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells) 22RV1 (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- TF65_HUMAN TBP_HUMAN KLF17_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.06 | -0.07 | 2.17 | n/a | No Hit | |||
| TBP_HUMAN | -0.23 | 1.39 | 1.50 | 0.82 | Weak Concordant | |||
| KLF17_HUMAN | -2.48 | 2.73 | 1.00 | n/a | No Hit | |||
| CLOCK_HUMAN | n/a | 2.82 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 0.43 | 1.87 | 1.00 | n/a | n/a |
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Motif analysis
