rs79478437 chr12:117155582 G>A
- Sequence
ggagcggaggccctgggggagggc[G/A]ggtatgactactgacccctcgcca
- ASB in cell types
- K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) PC9 (lung adenocarcinoma)
- ASB for transcription factors
- RBM25_HUMAN PKNX1_HUMAN PBX2_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 2.63 | 0.89 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | -0.55 | 0.48 | 1.50 | n/a | No Hit | |||
| PBX2_HUMAN | n/a | 2.50 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | -0.50 | 2.12 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Thyroid