rs79487137 chr2:71023799 C>T
- Sequence
cgaaaagcagcatctgccctcttc[C/T]gggcatcagtgctccctcaaacac
- ASB in cell types
- Detroit 562 (Pharyngeal squamous cell carcinoma) HCT-116 (colon carcinoma) CD4+ T cells from blood GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- TF65_HUMAN RAD21_HUMAN NFKB1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.00 | -0.49 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 2.07 | -0.47 | 1.00 | n/a | n/a | |||
| NFKB1_HUMAN | 2.35 | -2.03 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.80 | -0.16 | 1.00 | 1.86 | Weak Discordant |
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Motif analysis
