rs795093 chr3:12139320 G>A
- Sequence
aatgctcacatcattaagtccctt[G/A]tgagtggaagaaggaaaatgggaa
- ASB in cell types
- A549 (lung carcinoma) hASC (preadipocytes) THP-1 (acute monocytic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| A549 (lung carcinoma) | 0.86 | -0.00 | 1.97 | |||
| hASC (preadipocytes) | -1.10 | 1.62 | 1.00 | |||
| THP-1 (acute monocytic leukemia) | 0.33 | 0.90 | 1.00 | |||
| GM12878 (female B-cells lymphoblastoid cell line) | -0.32 | 0.98 | 1.25 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Uterus, Whole_Blood