rs79519281 chr14:37595010 G>C
- Sequence
tgcccaatacaaccatccagccct[G/C]tgcgaagcgacgggcggccgcgcg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP C4-2B (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN ZFX_HUMAN PAX2_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.59 | 2.61 | 2.10 | n/a | No Hit | |||
| ZFX_HUMAN | -0.15 | 1.72 | 1.25 | n/a | No Hit | |||
| PAX2_HUMAN | -3.45 | 1.80 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | -0.01 | 1.35 | 2.50 | n/a | n/a | |||
| SMCA5_HUMAN | n/a | 2.58 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Whole_Blood