rs79536844 chr3:50337635 C>T
- Sequence
aagcgcacaagagtggcctctggc[C/T]ggaggcgagggcgggaaggtgcgg
- ASB in cell types
- iPSC (induced pluripotent stem cells) breast tumor MOLT-4 (Adult T acute lymphoblastic leukemia) neural cell
- ASB for transcription factors
- AP2A_HUMAN ESR1_HUMAN KLF1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 3.36 | -3.35 | 1.00 | -1.66 | Weak Concordant | |||
| ESR1_HUMAN | 2.81 | n/a | 3.00 | n/a | No Hit | |||
| KLF1_HUMAN | 1.73 | -1.73 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.36 | 0.26 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.41 | 0.95 | 1.01 | 0.47 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood