rs79555052 chr6:153090718 C>T
- Sequence
cagcatgattaagtctcacgctgt[C/T]tccagcccaggatgtgaatcatcc
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) CD14+ monocytes
- ASB for transcription factors
- TF65_HUMAN STAT1_HUMAN NOTC1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.36 | n/a | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.34 | n/a | 2.00 | n/a | No Hit | |||
| NOTC1_HUMAN | 1.71 | n/a | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid