rs79557920 chr19:18417552 G>A
- Sequence
ctggcgggggcagtggtgggagcg[G/A]tcattaggatgggagtgacctgga
- ASB in cell types
- K562 (myelogenous leukemia) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- JUN_HUMAN BRD2_HUMAN RFOX2_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -1.10 | 2.06 | 2.21 | n/a | No Hit | |||
| BRD2_HUMAN | -0.70 | 2.27 | 2.00 | n/a | n/a | |||
| RFOX2_HUMAN | 2.53 | -4.62 | 2.00 | n/a | n/a | |||
| CDN1B_HUMAN | -0.44 | 2.29 | 2.33 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg