rs79557925 chr11:68040649 G>A
- Sequence
tggcacctgcccccaccccacatc[G/A]gccttgagcaaggccccgggccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes HepG2 (hepatoblastoma) breast tumor
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN COE1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.89 | -2.78 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.13 | -1.50 | 2.00 | n/a | No Hit | |||
| COE1_HUMAN | 1.67 | 0.35 | 1.17 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Uterus, Whole_Blood