rs79559948 chr2:113756932 G>T
- Sequence
cgtgggtgtctggggcagagcaaa[G/T]gacgagggagtggctaaacctccg
- ASB in cell types
- K562 (myelogenous leukemia) germinal center B-cells 22RV1 (prostate carcinoma) monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- ANDR_HUMAN SPI1_HUMAN CBP_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.01 | -4.99 | 2.00 | 0.88 | Weak Discordant | |||
| SPI1_HUMAN | 2.17 | -0.10 | 1.69 | n/a | No Hit | |||
| CBP_HUMAN | 2.42 | -1.54 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.59 | -1.11 | 2.00 | n/a | No Hit | |||
| MEF2B_HUMAN | 2.52 | -1.55 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood