rs796003 chr9:83980886 G>T
- Sequence
tgttgcgcgaggaaaatgcgggac[G/T]cccaggtcggtgctcggcccagac
- ASB in cell types
- CD14+ monocytes CTV-1 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN BRD4_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.04 | 0.02 | 1.35 | n/a | No Hit | |||
| STAT1_HUMAN | 2.54 | 0.96 | 2.33 | n/a | No Hit | |||
| BRD4_HUMAN | 1.06 | 0.26 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 1.15 | 0.30 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood