rs79753299 chr1:153945926 G>A
- Sequence
ccccacgcccgcgtgccgggtgac[G/A]ggaagttcgggttggggcagaggg
- ASB in cell types
- CD14+ monocytes HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) primary B-CLL cells
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN BRD4_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.58 | n/a | 2.00 | 0.03 | Weak Discordant | |||
| GCR_HUMAN | 0.22 | 1.25 | 1.00 | 2.63 | Concordant | |||
| BRD4_HUMAN | 1.88 | -1.05 | 3.00 | n/a | n/a | |||
| GABP1_HUMAN | -3.34 | 2.11 | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 2.56 | -2.18 | 1.00 | n/a | No Hit |
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Motif analysis
