rs804395 chr1:39789001 A>C
- Sequence
ctgcggccggtgtcgcgggtgggg[A/C]gaccccgaggtgctacctgggcgt
- ASB in cell types
- breast tumor
- ASB for transcription factors
- ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.77 | -0.43 | 1.80 | 1.17 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_EBV-transformed_lymphocytes, Nerve_Tibial, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid