rs806109 chr1:5992521 G>A
- Sequence
caatcagagcccaagtcgagggct[G/A]cgctttgcgagcgccagccaatcg
- ASB in cell types
- HEK293 (embryonic kidney) monocytes from periferal blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRBP2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 0.87 | 2.66 | 3.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.11 | 2.41 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid