rs8071081 chr17:58631694 T>G
- Sequence
acggtcaccaacagcaaacagcag[T/G]tagaataacgcaacaccaaacact
- ASB in cell types
- transverse colon GM19238 (female B-cells lymphoblastoid cell lines) SYO-1(Biphasic synovial sarcoma) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN PAX6_HUMAN GATA6_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.74 | -0.20 | 1.57 | n/a | No Hit | |||
| PAX6_HUMAN | 2.20 | -1.88 | 1.00 | n/a | No Hit | |||
| GATA6_HUMAN | 2.24 | -2.06 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Whole_Blood